Publications

• Singh AK, Bhattacharyya-Pakrasi M, Elvitigala T, Ghosh B, Aurora R, Pakrasi HB. (2009) A systems level analysis of the effects of light quality on the metabolism of a cyanobacterium. Submitted to PLoS One.
• Elvitigala T, Stöckel J, Ghosh B, Pakrasi HB. (2009) Effect of continuous light on diurnal rhythms in Cyanothece ATCC 51142. Submitted to BMC Genomics.
• Elvitigala T, Ghosh B, Pakrasi HB. (2009) Dynamic Network Modeling of Diurnal Genes in Cyanobacteria. Accepted for publication.
• Elvitigala T, Ghosh B, Pakrasi HB. (2009) Modeling and Simulation of Diurnal Biological Processes in Cyanobacteria. Accepted for publication in American Control Conference proceedings.
• Elvitigala T, Pakrasi HB, Ghosh B. (2009) Dynamical System modeling of Interactions in Cyanobacteria diurnal genes. Accepted for publication in Foundations of Systems Biology in Engineering conference proceedings.
• Singh AK, Elvitigala T, Bhattacharyya-Pakrasi M, Aurora R, Ghosh B, Pakrasi HB. (2008) Integration of carbon and nitrogen metabolism with energy production is crucial to light acclimation in the cyanobacterium Synechocystis. Plant Physiol. 148:467-78.
• Stöckel J, Welsh EA, Liberton M, Kunnvakkam R, Aurora R, Pakrasi HB.(2008) Global transcriptomic analysis of Cyanothece 51142 reveals robust diurnal oscillation of central metabolic processes. Proc Natl Acad Sci U S A 105:6156-61.
• Toepel J, Welsh E, Summerfield TC, Pakrasi HB, Sherman LA. Differential transcriptional analysis of the cyanobacterium Cyanothece sp. strain ATCC 51142 during light-dark and continuous-light growth. J Bacteriol 190:3904-13.
• Neuronal Transcriptome of Aplysia:Neuronal Compartments and Circuitry (2006) Leonid L. Moroz, John R. Edwards, Sathyanarayanan V. Puthanveettil, Andrea B. Kohn, Thomas Ha, Andreas Heyland, Bjarne Knudsen, Anuj Sahni, Fahong Yu, Li Liu, Sami Jezzini,Peter Lovell, William Iannucculli, Minchen Chen, Tuan Nguyen, Huitao Sheng, Regina Shaw,Sergey Kalachikov, Yuri V. Panchin, William Farmerie, James J. Russo, Jingyue Ju, and Eric R. Kandel. Cell 127, 1453–1467
• The C Terminus of the L-Type Voltage-Gated Calcium Channel CaV1.2 Encodes a Transcription Factor (2006) Natalia Gomez-Ospina,1 Fuminori Tsuruta,1,3 Odmara Barreto Chang,1,3 Linda Hu,2 and Ricardo Dolmetsch1,*Cell 127, 591–606
• The role of histone ubiquitylation and deubiquitylation in gene expression as determined by the analysis of an HTB1K123RSaccharomyces cerevisiae strain (2007) A. Irina Mutiu Stephen M. T. Hoke
• Julie Genereaux • Gaoyang Liang •Christopher J. Brandl Mol Genet Genomics, 277:491–506
• Structure/Function Analysis of the Phosphatidylinositol-3-Kinase Domain of Yeast Tra1 (2007) A. Irina Mutiu,*,1 Stephen M. T. Hoke,*,1 Julie Genereaux,* Carol Hannam,*,2 Katherine MacKenzie,* Olivier Jobin-Robitaille,† Julie Guzzo,‡ Jacques Coˆte´,†Brenda Andrews,‡ David B. Haniford* and Christopher J. Brandl*,Genetics 177: 151–166
• Microarray analysis of transcriptional responses to abscisic acid and osmotic, salt, and drought stress in the moss,Physcomitrella patens, (2007) Andrew C. Cuming, Sung Hyun Cho, Yasuko Kamisugi, Helen Graham and Ralph S. Quatrano New Phytologist 176: 275–287
• PhyR Is Involved in the General Stress Response of Methylobacterium extorquens AM1_† Benjamin Gourion, Anne Francez-Charlot, and Julia A. Vorholt* Institute of Microbiology, ETH Zurich, 8093 Zurich, Switzerland
• Use of Bacterial Quorum-Sensing Components to Regulate Gene Expression in Plants (2006) Young-Sook You, Heather Marella, Rodolfo Zentella2, Yiyong Zhou, Tim Ulmasov, Tuan-Hua David Ho,and Ralph S. Quatrano*
• Hypoxia alters gene expression in the gonads of zebrafish (Danio rerio) Dalma Martinovic, a, , Daniel L. Villeneuvea, Michael D. Kahla, Lindsey S. Blakea, Jeffrey D. Brodina and Gerald T. Ankleya US Environmental Protection Agency, Office of Research and Development, National Health and Environmental Effects Research Laboratory, Mid- Continent Ecology Division, 6201 Congdon Blvd., Duluth, MN, USA, 55804
• Micro-RNAs associated with metastasis in uveal melanoma identified by multiplexed microarray profiling Lori A. Worley, Meghan D. Long, Michael D. Onken and J. William Harbour